{
 "alignment_length": 685,
 "overall_identity": 0.8671532846715329,
 "windows_30col": [
  {
   "window_start": 1,
   "identity": 0.4
  },
  {
   "window_start": 31,
   "identity": 0.36666666666666664
  },
  {
   "window_start": 61,
   "identity": 0.1
  },
  {
   "window_start": 91,
   "identity": 0.8333333333333334
  },
  {
   "window_start": 121,
   "identity": 0.7
  },
  {
   "window_start": 151,
   "identity": 1.0
  },
  {
   "window_start": 181,
   "identity": 1.0
  },
  {
   "window_start": 211,
   "identity": 1.0
  },
  {
   "window_start": 241,
   "identity": 1.0
  },
  {
   "window_start": 271,
   "identity": 1.0
  },
  {
   "window_start": 301,
   "identity": 1.0
  },
  {
   "window_start": 331,
   "identity": 0.6
  },
  {
   "window_start": 361,
   "identity": 0.9666666666666667
  },
  {
   "window_start": 391,
   "identity": 1.0
  },
  {
   "window_start": 421,
   "identity": 1.0
  },
  {
   "window_start": 451,
   "identity": 1.0
  },
  {
   "window_start": 481,
   "identity": 1.0
  },
  {
   "window_start": 511,
   "identity": 1.0
  },
  {
   "window_start": 541,
   "identity": 1.0
  },
  {
   "window_start": 571,
   "identity": 1.0
  },
  {
   "window_start": 601,
   "identity": 1.0
  },
  {
   "window_start": 631,
   "identity": 1.0
  }
 ],
 "note": "Real Needleman-Wunsch alignment of NP_001011581.1 vs isoform X3 (685 columns, 86.72% identity). Windows of 30 columns; MAFFT multi-species conservation not yet run - align data/amfor_homologs.fasta with MAFFT and replace."
}